References¶
[Hughes2014] | Hughes J.R. et al., “Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment” Nature Genetics 46 (2014) |
[Davies2016] | Davies J.O. et al., “Multiplexed analysis of chromosome conformation at vastly improved sensitivity” Nature Methods 13 (2016) |
[capC-MAP] | Brackley C.A. et al., “capC-MAP : Analysis software for Capture-C data” (2018) |
[Langmead2009] | Langmead B. at al., “Ultrafast and memory-efficient alignment of short DNA sequences to the human genome” Genome Biology 10 (2009) |
[Martin2011] | Martin M. “Cutadapt removes adapter sequences from high-throughput sequencing reads” EMBnet.journal 17 (2011) |
[Li2009] | Li H. et al., “The Sequence Alignment/Map format and SAMtools” Bioinformatics 25 (2009) |
Useful Links¶
- cutadapt software: cutadapt.readthedocs.io
- bowtie software: bowtie-bio.sourceforge.net
- samtools software: samtools.sourceforge.net
- Biopython: biopython.org